If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 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'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 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'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 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'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 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'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ), 'gf_id' => 'HOM05D000734', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000734' ), 'data_identifier' => 'HOM05D000734', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000734', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '797', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02450' => 'bna', 'A02p11980' => 'bna', 'A02p41950' => 'bna', 'A03p06570' => 'bna', 'A03p15870' => 'bna', 'A03p48510' => 'bna', 'A04p13660' => 'bna', 'A09p44950' => 'bna', 'A10p15700' => 'bna', 'A10p28980' => 'bna', 'Aa31LG11G15150' => 'aar', 'Aa31LG3G19150' => 'aar', 'Aa31LG3G8450' => 'aar', 'Aa31LG9G990' => 'aar', 'Aa31sc655G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5589' => 'aag', 'Actinidia03104' => 'ach', 'Actinidia05229' => 'ach', 'Actinidia05957' => 'ach', 'Actinidia13466' => 'ach', 'Actinidia27410' => 'ach', 'Actinidia32528' => 'ach', 'Actinidia32627' => 'ach', 'Actinidia32895' => 'ach', 'Actinidia36146' => 'ach', 'Ah.07g208950' => 'amhyb', 'Ah.12g057610' => 'amhyb', 'Ah.12g057620' => 'amhyb', 'Ah.12g058910' => 'amhyb', 'AL5G32240' => 'aly', 'AL6G17440' => 'aly', 'AL6G25070' => 'aly', 'AL7G49170' => 'aly', 'AL8G26430' => 'aly', 'AL8G38880' => 'aly', 'Aqoxy2G00830' => 'aox', 'Aqoxy4G00107' => 'aox', 'Aqoxy4G02450' => 'aox', 'Aqoxy5G03617' => 'aox', 'Aqoxy7G00443' => 'aox', 'arahy.Tifrunner.gnm1.ann1.35MDCZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.37JSRQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9JS9HJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ADAM8V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWBP0X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CF9SCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DHJ6J2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ED3VG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5RX1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7GT2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KDQ9M0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TEF0AP' => 'arhy', 'AT3G51780' => 'ath', 'AT5G07220' => 'ath', 'AT5G14360' => 'ath', 'AT5G40630' => 'ath', 'AT5G52060' => 'ath', 'AT5G62100' => 'ath', 'ATR0122G031' => 'atr', 'ATR0681G253' => 'atr', 'ATR0757G013' => 'atr', 'ATR0824G079' => 'atr', 'ATR1098G118' => 'atr', 'Atru.chr1.517' => 'acertr', 'Atru.chr10.1035' => 'acertr', 'Atru.chr3.4163' => 'acertr', 'Atru.chr6.2465' => 'acertr', 'Atru.chr8.2289' => 'acertr', 'Atru.chr9.1543' => 'acertr', 'AUR62010653' => 'cqu', 'AUR62016031' => 'cqu', 'AUR62017293' => 'cqu', 'AUR62021236' => 'cqu', 'AUR62030504' => 'cqu', 'AUR62030789' => 'cqu', 'BcaB01g00419' => 'bca', 'BcaB01g00477' => 'bca', 'BcaB01g04180' => 'bca', 'BcaB01g05116' => 'bca', 'BcaB01g06330' => 'bca', 'BcaB01g06377' => 'bca', 'BcaB05g23947' => 'bca', 'BcaB06g27539' => 'bca', 'BcaB07g29801' => 'bca', 'BcaB08g36193' => 'bca', 'BcaC01g06157' => 'bca', 'BcaC03g13496' => 'bca', 'BcaC03g14553' => 'bca', 'BcaC03g18120' => 'bca', 'BcaC04g19038' => 'bca', 'BcaC06g32461' => 'bca', 'BcaC06g33007' => 'bca', 'BcaC06g33350' => 'bca', 'BcaNung03163' => 'bca', 'BolC2t06615H' => 'bol', 'BolC2t08134H' => 'bol', 'BolC2t12243H' => 'bol', 'BolC3t13260H' => 'bol', 'BolC3t14253H' => 'bol', 'BolC4t26347H' => 'bol', 'BolC7t45175H' => 'bol', 'BolC8t50318H' => 'bol', 'BolC9t59117H' => 'bol', 'BolC9t59678H' => 'bol', 'BraA02t05215Z' => 'bra', 'BraA02t06262Z' => 'bra', 'BraA02t09130Z' => 'bra', 'BraA03t09989Z' => 'bra', 'BraA03t10877Z' => 'bra', 'BraA03t13956Z' => 'bra', 'BraA04t17026Z' => 'bra', 'BraA09t39954Z' => 'bra', 'BraA10t44946Z' => 'bra', 'C02p06710' => 'bna', 'C02p20020' => 'bna', 'C02p61860' => 'bna', 'C03p07590' => 'bna', 'C03p18590' => 'bna', 'C04p47450' => 'bna', 'C07p46600' => 'bna', 'C08p27030' => 'bna', 'C09p50570' => 'bna', 'C09p62800' => 'bna', 'C09p69340' => 'bna', 'CAN.G174.12' => 'can', 'CAN.G241.13' => 'can', 'CAN.G241.18' => 'can', 'CAN.G243.36' => 'can', 'CAN.G36.27' => 'can', 'CAN.G473.41' => 'can', 'CAN.G548.4' => 'can', 'CAN.G981.34' => 'can', 'CANSAT21G0477' => 'cansat', 'CANSAT21G1993' => 'cansat', 'CANSAT35G0912' => 'cansat', 'CANSAT35G1428' => 'cansat', 'CANSAT54G2474' => 'cansat', 'CANSAT64G0952' => 'cansat', 'CARHR161410' => 'chi', 'CARHR198960' => 'chi', 'CARHR205920' => 'chi', 'CARHR261330' => 'chi', 'CARHR265000' => 'chi', 'CARHR272420' => 'chi', 'CARHR275890' => 'chi', 'Carub.0005s1813' => 'cru', 'Carub.0006s0615' => 'cru', 'Carub.0006s1254' => 'cru', 'Carub.0007s3486' => 'cru', 'Carub.0008s1216' => 'cru', 'Carub.0008s2278' => 'cru', 'Ca_00518_v3' => 'car', 'Ca_04393_v3' => 'car', 'Ca_05632_v3' => 'car', 'Ca_07214_v3' => 'car', 'Ca_07667_v3' => 'car', 'Ca_10794_v3' => 'car', 'Ca_20132_v3' => 'car', 'Ca_20246_v3' => 'car', 'Ca_27467_v3' => 'car', 'Ca_30513_v3' => 'car', 'Cc01_g13210' => 'ccan', 'Cc01_g14550' => 'ccan', 'Cc06_g01020' => 'ccan', 'Cc07_g00210' => 'ccan', 'Cc08_g14000' => 'ccan', 'Cc09_g08670' => 'ccan', 'Cc10_g10340' => 'ccan', 'CDE02G0405' => 'cde', 'CDE04G1033' => 'cde', 'CDE04G1540' => 'cde', 'CDE04G2468' => 'cde', 'CDE11G0430' => 'cde', 'CDE12G0685' => 'cde', 'Cfa000876' => 'cfa', 'Cfa007304' => 'cfa', 'Cfa008279' => 'cfa', 'Cfa011734' => 'cfa', 'Cfa012104' => 'cfa', 'Cfa017163' => 'cfa', 'Cfa017180' => 'cfa', 'Ciclev10005288m.g' => 'ccl', 'Ciclev10012355m.g' => 'ccl', 'Ciclev10016355m.g' => 'ccl', 'Ciclev10016973m.g' => 'ccl', 'Ciclev10021471m.g' => 'ccl', 'CiPaw.03G048300' => 'cil', 'CiPaw.03G102600' => 'cil', 'CiPaw.04G031800' => 'cil', 'CiPaw.04G067500' => 'cil', 'CiPaw.09G117900' => 'cil', 'CiPaw.09G212600' => 'cil', 'CiPaw.10G159000' => 'cil', 'CiPaw.12G098100' => 'cil', 'CiPaw.13G073900' => 'cil', 'CiPaw.14G056800' => 'cil', 'ClCG01G005650' => 'cla', 'ClCG02G019410' => 'cla', 'ClCG03G006440' => 'cla', 'ClCG04G006840' => 'cla', 'ClCG05G007810' => 'cla', 'ClCG07G006720' => 'cla', 'ClCG09G019530' => 'cla', 'COL.COLO4_11086' => 'col', 'COL.COLO4_14262' => 'col', 'COL.COLO4_14492' => 'col', 'COL.COLO4_14493' => 'col', 'COL.COLO4_17661' => 'col', 'COL.COLO4_29235' => 'col', 'Cpa.g.c33733.1' => 'cpa', 'Cpa.g.c38550' => 'cpa', 'Cpa.g.sc107.5' => 'cpa', 'Cpa.g.sc120.29' => 'cpa', 'Cpa.g.sc2.421' => 'cpa', 'Cpa.g.sc74.88' => 'cpa', 'Cre12.g544900' => 'cre', 'CsaV3_1G036950' => 'csa', 'CsaV3_3G016810' => 'csa', 'CsaV3_4G026440' => 'csa', 'CsaV3_5G005880' => 'csa', 'CsaV3_5G015450' => 'csa', 'CsaV3_5G026850' => 'csa', 'CsaV3_6G016030' => 'csa', 'CSS0000044' => 'camsi', 'CSS0007025' => 'camsi', 'CSS0007141' => 'camsi', 'CSS0009844' => 'camsi', 'CSS0010683' => 'camsi', 'CSS0016429' => 'camsi', 'CSS0017382' => 'camsi', 'CSS0018613' => 'camsi', 'CSS0024381' => 'camsi', 'CSS0029714' => 'camsi', 'CSS0030278' => 'camsi', 'CSS0037738' => 'camsi', 'CSS0038872' => 'camsi', 'CSS0044000' => 'camsi', 'DCAR_004678' => 'dca', 'DCAR_006760' => 'dca', 'DCAR_011277' => 'dca', 'DCAR_018166' => 'dca', 'DCAR_020235' => 'dca', 'DCAR_024008' => 'dca', 'DCAR_028871' => 'dca', 'Dinv08452' => 'din', 'Dinv09647' => 'din', 'Dinv21496' => 'din', 'Dinv25709' => 'din', 'Dinv28480' => 'din', 'Dinv28669' => 'din', 'Dinv32204' => 'din', 'Dinv33401' => 'din', 'Dinv35178' => 'din', 'Dinv39009' => 'din', 'Duzib052G0860' => 'dzi', 'Duzib068G1202' => 'dzi', 'Duzib084G0172' => 'dzi', 'Duzib093G0094' => 'dzi', 'Duzib106G1236' => 'dzi', 'Duzib132G0491' => 'dzi', 'Duzib147G0240' => 'dzi', 'Duzib150G0122' => 'dzi', 'Duzib168G2210' => 'dzi', 'Duzib187G0957' => 'dzi', 'Duzib205G1344' => 'dzi', 'Duzib235G0267' => 'dzi', 'Duzib248G0394' => 'dzi', 'Duzib264G0405' => 'dzi', 'ECA232G1900' => 'eca', 'ECA232G4110' => 'eca', 'ECA233G0043' => 'eca', 'ECA233G3727' => 'eca', 'ECA238G0163' => 'eca', 'ECA238G0176' => 'eca', 'ECA246G0542' => 'eca', 'ECA247G1777' => 'eca', 'ECA247G1904' => 'eca', 'EL10Ac3g05694' => 'bvu', 'EL10Ac5g12522' => 'bvu', 'EL10Ac5g12728' => 'bvu', 'EL10Ac7g17165' => 'bvu', 'Eucgr.D00246' => 'egr', 'Eucgr.D01920' => 'egr', 'Eucgr.D01921' => 'egr', 'Eucgr.J01901' => 'egr', 'Eucgr.J02267' => 'egr', 'Eucgr.K00225' => 'egr', 'Eucgr.K02967' => 'egr', 'Eucgr.L01966' => 'egr', 'FAN01G2315' => 'fan', 'FAN02G0065' => 'fan', 'FAN02G2521' => 'fan', 'FAN03G0620' => 'fan', 'FAN03G3287' => 'fan', 'FAN05G3081' => 'fan', 'FAN05G3126' => 'fan', 'FAN06G0714' => 'fan', 'FAN06G2155' => 'fan', 'FAN09G0275' => 'fan', 'FAN10G1508' => 'fan', 'FAN11G1936' => 'fan', 'FAN11G3369' => 'fan', 'FAN14G1010' => 'fan', 'FAN14G5513' => 'fan', 'FAN16G0022' => 'fan', 'FAN19G0707' => 'fan', 'FAN21G2438' => 'fan', 'FAN21G2868' => 'fan', 'FAN25G0778' => 'fan', 'FvH4_3g09490' => 'fve', 'FvH4_3g39130' => 'fve', 'FvH4_5g01500' => 'fve', 'FvH4_6g11020' => 'fve', 'FvH4_6g52220' => 'fve', 'FvH4_7g29010' => 'fve', 'Glyma.01G123300' => 'gma', 'Glyma.02G229300' => 'gma', 'Glyma.03G051600' => 'gma', 'Glyma.05G049600' => 'gma', 'Glyma.07G153700' => 'gma', 'Glyma.09G146500' => 'gma', 'Glyma.09G146700' => 'gma', 'Glyma.13G220500' => 'gma', 'Glyma.15G091900' => 'gma', 'Glyma.16G066700' => 'gma', 'Glyma.16G198500' => 'gma', 'Glyma.16G198600' => 'gma', 'Glyma.17G131600' => 'gma', 'Glyma.19G054400' => 'gma', 'Glyma.19G080300' => 'gma', 'Gohir.A01G228500' => 'ghi', 'Gohir.A04G094300' => 'ghi', 'Gohir.A05G107600' => 'ghi', 'Gohir.A07G225000' => 'ghi', 'Gohir.A08G101800' => 'ghi', 'Gohir.A08G201900' => 'ghi', 'Gohir.A09G031700' => 'ghi', 'Gohir.A11G009500' => 'ghi', 'Gohir.A12G260500' => 'ghi', 'Gohir.D01G218400' => 'ghi', 'Gohir.D04G133700' => 'ghi', 'Gohir.D05G107800' => 'ghi', 'Gohir.D07G232200' => 'ghi', 'Gohir.D08G113100' => 'ghi', 'Gohir.D08G218900' => 'ghi', 'Gohir.D09G031700' => 'ghi', 'Gohir.D09G162500' => 'ghi', 'Gohir.D11G008800' => 'ghi', 'Gohir.D12G261400' => 'ghi', 'Gorai.001G267400' => 'gra', 'Gorai.002G265100' => 'gra', 'Gorai.004G121700' => 'gra', 'Gorai.004G233000' => 'gra', 'Gorai.006G036700' => 'gra', 'Gorai.006G184200' => 'gra', 'Gorai.007G010400' => 'gra', 'Gorai.008G280100' => 'gra', 'Gorai.009G111900' => 'gra', 'Gorai.012G117500' => 'gra', 'GSVIVG01003981001' => 'vvi', 'GSVIVG01010619001' => 'vvi', 'GSVIVG01021575001' => 'vvi', 'GSVIVG01024693001' => 'vvi', 'GSVIVG01030331001' => 'vvi', 'HanXRQChr02g0048821' => 'han', 'HanXRQChr05g0141321' => 'han', 'HanXRQChr07g0188491' => 'han', 'HanXRQChr07g0199111' => 'han', 'HanXRQChr07g0206841' => 'han', 'HanXRQChr08g0225411' => 'han', 'HanXRQChr08g0225421' => 'han', 'HanXRQChr08g0229171' => 'han', 'HanXRQChr09g0255921' => 'han', 'HanXRQChr09g0275541' => 'han', 'HanXRQChr10g0291511' => 'han', 'HanXRQChr10g0314311' => 'han', 'HanXRQChr11g0342311' => 'han', 'HanXRQChr12g0382791' => 'han', 'HanXRQChr13g0405641' => 'han', 'HanXRQChr14g0451051' => 'han', 'HanXRQChr14g0462071' => 'han', 'HanXRQChr15g0463931' => 'han', 'HanXRQChr15g0474611' => 'han', 'HanXRQChr15g0486351' => 'han', 'HanXRQChr17g0549421' => 'han', 'Haze_05715' => 'cav', 'Haze_08947' => 'cav', 'Haze_13755' => 'cav', 'Haze_14790' => 'cav', 'Haze_21042' => 'cav', 'Haze_24374' => 'cav', 'Hma1.2p1_0099F.1_g048560' => 'hma', 'Hma1.2p1_0270F.1_g108450' => 'hma', 'Hma1.2p1_0270F.1_g108460' => 'hma', 'Hma1.2p1_0514F.1_g170090' => 'hma', 'Hma1.2p1_0689F.1_g203790' => 'hma', 'HPP92_002459' => 'vpl', 'HPP92_002472' => 'vpl', 'HPP92_007368' => 'vpl', 'HPP92_007376' => 'vpl', 'HPP92_015044' => 'vpl', 'HPP92_017053' => 'vpl', 'HPP92_017718' => 'vpl', 'HPP92_022368' => 'vpl', 'Hund04703' => 'sun', 'Hund10957' => 'sun', 'Hund11529' => 'sun', 'Hund11773' => 'sun', 'Hund14725' => 'sun', 'Lalb_Chr01g0009041' => 'lal', 'Lalb_Chr01g0009051' => 'lal', 'Lalb_Chr01g0009121' => 'lal', 'Lalb_Chr01g0023201' => 'lal', 'Lalb_Chr02g0158041' => 'lal', 'Lalb_Chr02g0158051' => 'lal', 'Lalb_Chr03g0034261' => 'lal', 'Lalb_Chr03g0043391' => 'lal', 'Lalb_Chr06g0161001' => 'lal', 'Lalb_Chr07g0191241' => 'lal', 'Lalb_Chr10g0103501' => 'lal', 'Lalb_Chr19g0124351' => 'lal', 'Lalb_Chr19g0131061' => 'lal', 'Lj1A130T37' => 'lonja', 'Lj1A992T72' => 'lonja', 'Lj1C1167T10' => 'lonja', 'Lj1g0013682' => 'lja', 'Lj1g0019974' => 'lja', 'Lj2A195T70' => 'lonja', 'Lj2A70T40' => 'lonja', 'Lj2C195T5' => 'lonja', 'Lj2g0001830' => 'lja', 'Lj2g0024940' => 'lja', 'Lj3g0023463' => 'lja', 'Lj4g0010508' => 'lja', 'Lj6g0017799' => 'lja', 'Lj8A28T36' => 'lonja', 'LjContig00238g0000303' => 'lja', 'Lju41A45T58' => 'lonja', 'Lju41C44G20' => 'lonja', 'Lsat_1_v5_gn_0_21761' => 'lsa', 'Lsat_1_v5_gn_2_133260' => 'lsa', 'Lsat_1_v5_gn_2_93441' => 'lsa', 'Lsat_1_v5_gn_4_184641' => 'lsa', 'Lsat_1_v5_gn_6_7240' => 'lsa', 'Lsat_1_v5_gn_8_7520' => 'lsa', 'Lsat_1_v5_gn_9_18801' => 'lsa', 'Lsat_1_v5_gn_9_37481' => 'lsa', 'Lsat_1_v5_gn_9_54500' => 'lsa', 'Manes.01G066900' => 'mes', 'Manes.02G027600' => 'mes', 'Manes.06G143800' => 'mes', 'Manes.09G108800' => 'mes', 'Manes.14G029000' => 'mes', 'Manes.15G154500' => 'mes', 'Manes.17G074800' => 'mes', 'Manes.17G108900' => 'mes', 'Manes.18G141400' => 'mes', 'Mapoly0056s0101' => 'mpo', 'MBI02_g26598_MAGBIO' => 'mbi', 'MBI03_g18943_MAGBIO' => 'mbi', 'MBI04_g35777_MAGBIO' => 'mbi', 'MBI05_g18174_MAGBIO' => 'mbi', 'MBI11_g27673_MAGBIO' => 'mbi', 'MBI11_g32115_MAGBIO' => 'mbi', 'MBI11_g32387_MAGBIO' => 'mbi', 'MBI12_g45863_MAGBIO' => 'mbi', 'MBI15_g28808_MAGBIO' => 'mbi', 'MBI16_g18969_MAGBIO' => 'mbi', 'MBI18_g41139_MAGBIO' => 'mbi', 'MBI18_g43580_MAGBIO' => 'mbi', 'MCO07G219' => 'mco', 'MD01G1196900' => 'mdo', 'MD03G1063900' => 'mdo', 'MD04G1067400' => 'mdo', 'MD04G1162100' => 'mdo', 'MD05G1277400' => 'mdo', 'MD06G1072800' => 'mdo', 'MD07G1264300' => 'mdo', 'MD09G1019600' => 'mdo', 'MD10G1256300' => 'mdo', 'MD11G1067400' => 'mdo', 'MD12G1174600' => 'mdo', 'MD17G1020200' => 'mdo', 'Medtr0086s0010' => 'mtr', 'Medtr1g101440' => 'mtr', 'Medtr2g018860' => 'mtr', 'Medtr2g032910' => 'mtr', 'Medtr4g017810' => 'mtr', 'Medtr4g102740' => 'mtr', 'Medtr6g022020' => 'mtr', 'Medtr6g022040' => 'mtr', 'Medtr7g069610' => 'mtr', 'MELO3C001388.2' => 'cme', 'MELO3C001657.2' => 'cme', 'MELO3C002778.2' => 'cme', 'MELO3C005368.2' => 'cme', 'MELO3C006875.2' => 'cme', 'MELO3C018303.2' => 'cme', 'MELO3C021609.2' => 'cme', 'MELO3C026009.2' => 'cme', 'MELO3C026833.2' => 'cme', 'MELO3C028118.2' => 'cme', 'Migut.A00923' => 'egut', 'Migut.F00376' => 'egut', 'Migut.F01144' => 'egut', 'Migut.H01345' => 'egut', 'Migut.J00125' => 'egut', 'Migut.K01425' => 'egut', 'Migut.L02035' => 'egut', 'MSTRG.108' => 'ama', 'MSTRG.12019' => 'ama', 'MSTRG.13260' => 'ama', 'MSTRG.13819' => 'ama', 'MSTRG.14784' => 'ama', 'MSTRG.24054' => 'ama', 'MSTRG.25576' => 'ama', 'MSTRG.27137' => 'ama', 'MSTRG.3277' => 'ama', 'MSTRG.5559' => 'ama', 'MSTRG.8765' => 'ama', 'Nitab4.5_0000040g0510' => 'nta', 'Nitab4.5_0000315g0190' => 'nta', 'Nitab4.5_0000721g0290' => 'nta', 'Nitab4.5_0000935g0130' => 'nta', 'Nitab4.5_0000967g0090' => 'nta', 'Nitab4.5_0001031g0270' => 'nta', 'Nitab4.5_0001083g0070' => 'nta', 'Nitab4.5_0001306g0030' => 'nta', 'Nitab4.5_0002234g0100' => 'nta', 'Nitab4.5_0002853g0110' => 'nta', 'Nitab4.5_0004007g0010' => 'nta', 'Nitab4.5_0005024g0010' => 'nta', 'Nitab4.5_0005414g0010' => 'nta', 'Nitab4.5_0006993g0010' => 'nta', 'Nitab4.5_0008731g0010' => 'nta', 'Nitab4.5_0008731g0020' => 'nta', 'Nitab4.5_0011532g0010' => 'nta', 'Nn2g10931' => 'nnu', 'Nn3g16610' => 'nnu', 'Nn3g20290' => 'nnu', 'Nn4g22497' => 'nnu', 'Nn4g26646' => 'nnu', 'Nn6g34249' => 'nnu', 'Oeu021757.1' => 'oeu', 'Oeu022547.1' => 'oeu', 'Oeu030125.1' => 'oeu', 'Oeu033562.1' => 'oeu', 'Oeu041162.1' => 'oeu', 'Oeu050447.1' => 'oeu', 'Oeu054651.1' => 'oeu', 'Oeu061634.1' => 'oeu', 'Oeu062361.1' => 'oeu', 'Oeu062393.1' => 'oeu', 'Oeu062729.1' => 'oeu', 'Oeu062776.1' => 'oeu', 'Oeu063381.1' => 'oeu', 'Os01g0831200' => 'osa', 'Os01g0907200' => 'osa', 'Os02g0597700' => 'osa', 'Os04g0483000' => 'osa', 'Os04g0619900' => 'osa', 'Os06g0126500' => 'osa', 'Os08g0546100' => 'osa', 'Os09g0524800' => 'osa', 'Peaxi162Scf00009g01415' => 'pax', 'Peaxi162Scf00040g00620' => 'pax', 'Peaxi162Scf00045g02321' => 'pax', 'Peaxi162Scf00053g02011' => 'pax', 'Peaxi162Scf00420g00143' => 'pax', 'Peaxi162Scf00700g00232' => 'pax', 'Peaxi162Scf00714g00619' => 'pax', 'Peaxi162Scf00915g00027' => 'pax', 'PGR004G0145' => 'pgr', 'PGR031G2289' => 'pgr', 'PGR083G0522' => 'pgr', 'PGR083G1529' => 'pgr', 'PGR142G1281' => 'pgr', 'PGSC0003DMG400006966' => 'stu', 'PGSC0003DMG400011032' => 'stu', 'PGSC0003DMG400012641' => 'stu', 'PGSC0003DMG400014312' => 'stu', 'PGSC0003DMG400020545' => 'stu', 'PGSC0003DMG400022760' => 'stu', 'PGSC0003DMG400025283' => 'stu', 'PGSC0003DMG400038559' => 'stu', 'Phvul.003G212500' => 'pvu', 'Phvul.004G059000' => 'pvu', 'Phvul.004G121700' => 'pvu', 'Phvul.004G121800' => 'pvu', 'Phvul.006G167400' => 'pvu', 'Phvul.008G095000' => 'pvu', 'Phvul.008G147200' => 'pvu', 'Phvul.008G259000' => 'pvu', 'Phvul.010G073600' => 'pvu', 'Phvul.010G086300' => 'pvu', 'Potri.001G110300' => 'ptr', 'Potri.001G279500' => 'ptr', 'Potri.001G339100' => 'ptr', 'Potri.001G358200' => 'ptr', 'Potri.003G121500' => 'ptr', 'Potri.009G074300' => 'ptr', 'Potri.012G133400' => 'ptr', 'Potri.015G135500' => 'ptr', 'Potri.016G121200' => 'ptr', 'Pp3c26_11200' => 'ppa', 'Pp3c4_23970' => 'ppa', 'Prupe.2G290300' => 'ppe', 'Prupe.3G296800' => 'ppe', 'Prupe.4G087300' => 'ppe', 'Prupe.5G091300' => 'ppe', 'Prupe.6G053300' => 'ppe', 'Prupe.6G281800' => 'ppe', 'Psat1g082920' => 'psa', 'Psat1g082960' => 'psa', 'Psat1g102960' => 'psa', 'Psat1g191720' => 'psa', 'Psat3g125600' => 'psa', 'Psat4g067200' => 'psa', 'Psat6g200120' => 'psa', 'Psat7g243240' => 'psa', 'PSO017G0714' => 'pso', 'PSO063G3873' => 'pso', 'PSO170G0888' => 'pso', 'PSO478G4439' => 'pso', 'PSO541G3764' => 'pso', 'PSO675G4917' => 'pso', 'PSO782G3322' => 'pso', 'PSO782G3635' => 'pso', 'QL01p039232' => 'qlo', 'QL02p073454' => 'qlo', 'QL05p054348' => 'qlo', 'QL07p034427' => 'qlo', 'QL09p014999' => 'qlo', 'QL12p017239' => 'qlo', 'RcHm_v2.0_Chr1g0376721' => 'rch', 'RcHm_v2.0_Chr2g0152841' => 'rch', 'RcHm_v2.0_Chr2g0173771' => 'rch', 'RcHm_v2.0_Chr3g0462361' => 'rch', 'RcHm_v2.0_Chr5g0015071' => 'rch', 'RcHm_v2.0_Chr5g0070521' => 'rch', 'RcHm_v2.0_Chr7g0199191' => 'rch', 'Rhsim03G0177200' => 'rsi', 'Rhsim04G0126100' => 'rsi', 'Rhsim07G0094700' => 'rsi', 'Rhsim08G0047200' => 'rsi', 'Rhsim09G0196400' => 'rsi', 'Rhsim10G0012900' => 'rsi', 'Rhsim13G0066900' => 'rsi', 'RhsimUnG0004800' => 'rsi', 'RhsimUnG0151100' => 'rsi', 'Sabra01G0083500' => 'sbr', 'Sabra03G0085700' => 'sbr', 'Sabra09G0056400' => 'sbr', 'Sabra12G0100200' => 'sbr', 'Sabra15G0147500' => 'sbr', 'Sabra16G0173200' => 'sbr', 'Sabra16G0219600' => 'sbr', 'Sabra16G0236000' => 'sbr', 'SalBow2G0202' => 'sbo', 'SalBow4G1002' => 'sbo', 'SalBow4G1344' => 'sbo', 'SalBow4G2897' => 'sbo', 'SalBow6G0646' => 'sbo', 'SalBow7G1320' => 'sbo', 'SalBow7G2469' => 'sbo', 'SalBow7G4789' => 'sbo', 'Sc01g0008770' => 'sci', 'Sc05g0005940' => 'sci', 'Sc13g0008430' => 'sci', 'Sc16g0003750' => 'sci', 'Sc19g0001700' => 'sci', 'Sc22g0002600' => 'sci', 'Sed0007145' => 'sed', 'Sed0008084' => 'sed', 'Sed0008953' => 'sed', 'Sed0011799' => 'sed', 'Sed0015014' => 'sed', 'Sed0016254' => 'sed', 'Sed0018204' => 'sed', 'Sed0019680' => 'sed', 'Sed0023577' => 'sed', 'Sed0024890' => 'sed', 'Sed0028021' => 'sed', 'Sed0028188' => 'sed', 'SEGI_06974' => 'sgi', 'SEGI_21113' => 'sgi', 'SGA_v2.0_scaffold135G34927' => 'sas', 'SGA_v2.0_scaffold154G37140' => 'sas', 'SGA_v2.0_scaffold221G42726' => 'sas', 'SGA_v2.0_scaffold240G44076' => 'sas', 'SGA_v2.0_scaffold2G01078' => 'sas', 'SGA_v2.0_scaffold4879G54550' => 'sas', 'SGA_v2.0_scaffold51G18643' => 'sas', 'SGA_v2.0_scaffold85G26711' => 'sas', 'SMO145G0066' => 'smo', 'SMO364G0720' => 'smo', 'Solyc02g093610.3' => 'sly', 'Solyc03g026220.3' => 'sly', 'Solyc06g007240.4' => 'sly', 'Solyc06g035720.3' => 'sly', 'Solyc08g080320.3' => 'sly', 'Solyc10g085290.3' => 'sly', 'Sopen02g038040' => 'spe', 'Sopen02g038240' => 'spe', 'Sopen03g005090' => 'spe', 'Sopen06g002200' => 'spe', 'Sopen06g011510' => 'spe', 'Sopen08g028670' => 'spe', 'Sopen10g034740' => 'spe', 'Sp2g25280' => 'spa', 'Sp5g10490' => 'spa', 'Sp6g14320' => 'spa', 'Sp6g29670' => 'spa', 'Sp6g35680' => 'spa', 'Sp7g01240' => 'spa', 'TAR374G1679' => 'tar', 'TAR375G1096' => 'tar', 'TAR622G0085' => 'tar', 'TAR623G1749' => 'tar', 'TAR626G0758' => 'tar', 'TAR627G0304' => 'tar', 'TAR633G2349' => 'tar', 'TAR636G1775' => 'tar', 'THA.LOC104798739' => 'tha', 'THA.LOC104801905' => 'tha', 'THA.LOC104806601' => 'tha', 'THA.LOC104806612' => 'tha', 'THA.LOC104811996' => 'tha', 'THA.LOC104818273' => 'tha', 'THA.LOC104821104' => 'tha', 'THA.LOC104825093' => 'tha', 'THA.LOC104825344' => 'tha', 'Thecc.02G009800' => 'tca', 'Thecc.03G170700' => 'tca', 'Thecc.04G024400' => 'tca', 'Thecc.05G010500' => 'tca', 'Thecc.06G017400' => 'tca', 'Thecc.09G353000' => 'tca', 'Thhalv10004705m.g' => 'esa', 'Thhalv10010632m.g' => 'esa', 'Thhalv10014030m.g' => 'esa', 'Thhalv10014190m.g' => 'esa', 'Thhalv10014879m.g' => 'esa', 'Thhalv10028263m.g' => 'esa', 'TPR.G17426' => 'tpr', 'TPR.G19212' => 'tpr', 'TPR.G21315' => 'tpr', 'TPR.G21636' => 'tpr', 'TPR.G25066' => 'tpr', 'TPR.G26245' => 'tpr', 'TPR.G30241' => 'tpr', 'TPR.G8211' => 'tpr', 'TWI09G1363' => 'twi', 'TWI12G1321' => 'twi', 'TWI14G0476' => 'twi', 'TWI15G1022' => 'twi', 'TWI23G0988' => 'twi', 'TWI31G0046' => 'twi', 'TWI39G0096' => 'twi', 'TWI74G0514' => 'twi', 'TWI81G0297' => 'twi', 'unitig_0.g1163' => 'ugi', 'unitig_21.g20361' => 'ugi', 'unitig_26.g10189' => 'ugi', 'unitig_26.g9082' => 'ugi', 'unitig_37.g11955' => 'ugi', 'unitig_61.g26294' => 'ugi', 'vmacro02943' => 'vma', 'vmacro05901' => 'vma', 'vmacro06723' => 'vma', 'vmacro08895' => 'vma', 'vmacro09858' => 'vma', 'vmacro18305' => 'vma', 'vmacro22744' => 'vma', 'vmacro22745' => 'vma', 'VMungo0464G0083' => 'vmu', 'VMungo0464G2159' => 'vmu', 'VMungo0540G0680' => 'vmu', 'VMungo0647G2426' => 'vmu', 'VMungo1215G3069' => 'vmu', 'VMungo1383G1002' => 'vmu', 'VMungo1383G2582' => 'vmu', 'Zm00001eb037570' => 'zma', 'Zm00001eb070410' => 'zma', 'Zm00001eb079320' => 'zma', 'Zm00001eb103150' => 'zma', 'Zm00001eb148980' => 'zma', 'Zm00001eb183910' => 'zma', 'Zm00001eb198560' => 'zma', 'Zm00001eb246230' => 'zma', 'Zm00001eb256820' => 'zma', 'Zm00001eb268040' => 'zma', 'Zm00001eb318990' => 'zma', 'Zm00001eb365220' => 'zma', 'Zm00001eb368400' => 'zma', 'Zm00001eb374660' => 'zma', 'Zm00001eb378640' => 'zma' ) $gf_id = 'HOM05D000734' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000734' ) $data_identifier = 'HOM05D000734' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 12, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 6, 'bca' => (int) 19, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 7, 'cru' => (int) 6, 'car' => (int) 10, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 7, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 10, 'dzi' => (int) 14, 'eca' => (int) 9, 'bvu' => (int) 4, 'egr' => (int) 8, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 15, 'ghi' => (int) 19, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 21, 'cav' => (int) 6, 'hma' => (int) 5, 'vpl' => (int) 8, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 9, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 12, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 9, 'cme' => (int) 10, 'egut' => (int) 7, 'ama' => (int) 11, 'nta' => (int) 17, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 8, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 8, 'pvu' => (int) 10, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 8, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 8, 'sbo' => (int) 8, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 7, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 9, 'ugi' => (int) 6, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb378640' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1